euL1db
The European database of L1-HS retrotransposon insertions in humans

Home Background Search Browse Utilities Help FAQ Data Contact
Previous EXPORT


   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

88 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip8 chr1 3508012 3508012 - L1-Ta somatic validated no 615 MEGF6
srip97 chr1 17754089 17754089 + L1-Ta somatic validated no 615 RCC2
srip325 chr1 40342081 40342081 + L1-Ta germline . no 615 TRIT1
srip883 chr1 56535816 56535816 - L1-Ta germline validated no 615 .
srip2021 chr1 81855784 81855784 + L1-Ta germline . no 615 .
srip2284 chr1 90309931 90309931 - L1-Ta somatic validated no 615 LRRC8D
srip7196 chr1 236248686 236248686 + L1-Ta germline . no 615 .
srip8444 chr10 25707688 25707688 - L1-Ta germline . no 615 GPR158
srip8804 chr10 39098462 39098462 + L1-Ta germline . no 615 .
srip10336 chr10 88827234 88827234 - L1-Ta germline . no 615 GLUD1
srip13206 chr11 29463700 29463700 + L1-Ta germline . no 615 .
srip14264 chr11 41831810 41831810 - L1-Ta germline . no 615 .
srip15365 chr11 58171839 58171839 + L1-Ta germline . no 615 .
srip17488 chr11 104260553 104260553 - L1-pre-Ta germline . no 615 .
srip19293 chr11 134305648 134305648 - L1-Ta germline validated no 615 .
srip19915 chr12 11219230 11219230 - L1-Ta germline . no 615 PRH1-PRR4
srip20879 chr12 31353756 31353756 - L1-Ta germline . no 615 OVOS2
srip23976 chr12 79338029 79338029 - L1-pre-Ta germline . no 615 SYT1
srip26766 chr13 22489757 22489757 + L1-Ta germline . no 615 .
srip27130 chr13 27487992 27487992 + L1-Ta germline . no 615 .
srip28185 chr13 48856543 48856543 + L1-Ta germline . no 615 .
srip28925 chr13 61462329 61462329 - L1-Ta germline . no 615 .
srip29659 chr13 61734545 61734545 + L1-Ta germline . no 615 .
srip31695 chr13 85871617 85871617 - L1-Ta germline . no 615 .
srip35601 chr14 36674729 36674729 + L1-Ta germline . no 615 .
srip37351 chr14 59220402 59220402 + L1-Ta germline . no 615 .
srip39758 chr15 37707896 37707896 - L1-Ta germline . no 615 .
srip44186 chr16 20322423 20322423 - L1-Ta somatic validated no 615 GP2
srip46355 chr16 71028058 71028058 + L1-Ta germline validated no 615 HYDIN
srip47949 chr17 48919097 48919097 + L1-Ta somatic validated no 615 WFIKKN2
srip48447 chr17 68357410 68357410 + L1-Ta germline . no 615 .
srip52422 chr19 45444553 45444553 + L1-Ta germline . no 615 .
srip52777 chr2 7050509 7050509 + L1-Ta germline . no 615 .
srip53610 chr2 23191064 23191064 - L1-Ta germline . no 615 .
srip54942 chr2 53460057 53460057 + L1-Ta germline . no 615 .
srip56255 chr2 82098046 82098046 + L1-Ta germline . no 615 .
srip56908 chr2 106163165 106163165 + L1-Ta germline validated no 615 .
srip58229 chr2 141852913 141852913 - L1-Ta germline . no 615 LRP1B
srip58948 chr2 147020924 147020924 + L1-Ta germline . no 615 .
srip61141 chr2 199779916 199779916 + L1-Ta germline . no 615 .
srip64758 chr20 41952104 41952104 - L1-Ta germline . no 615 .
srip65874 chr21 19517306 19517306 - L1-Ta germline . no 615 .
srip66178 chr21 23626190 23626190 - L1-Ta germline . no 615 .
srip71935 chr3 38626084 38626084 + L1-Ta germline . no 615 SCN5A
srip72157 chr3 49441504 49441504 - L1-Ta germline . no 615 RHOA
srip72730 chr3 55788580 55788580 + L1-Ta germline validated no 615 ERC2
srip73435 chr3 59852905 59852905 + L1-Ta germline validated no 615 FHIT
srip75096 chr3 84433399 84433399 + L1-Ta germline . no 615 .
srip78579 chr3 151148542 151148542 - L1-Ta germline validated no 615 MED12L
srip80068 chr3 173917283 173917283 + L1-Ta germline . no 615 NLGN1
srip81666 chr3 187835313 187835313 - L1-Ta germline . no 615 .
srip82144 chr3 193354185 193354185 - L1-Ta germline validated no 615 OPA1
srip82377 chr4 10632678 10632678 - L1-Ta germline validated no 615 CLNK
srip84728 chr4 47007790 47007790 - L1-Ta germline . no 615 .
srip85085 chr4 53628438 53628438 + L1-Ta germline . no 615 .
srip87096 chr4 72204596 72204596 + L1-Ta germline . no 615 SLC4A4
srip92251 chr4 134596425 134596425 + L1-Ta germline . no 615 .
srip92954 chr4 147225285 147225285 + L1-Ta germline validated no 615 SLC10A7
srip93848 chr4 158907270 158907270 - L1-Ta germline . no 615 .
srip94425 chr4 169773646 169773646 + L1-Ta germline . no 615 PALLD
srip96369 chr5 11391277 11391277 + L1-Ta germline validated no 615 CTNND2
srip96919 chr5 21207734 21207734 + L1-Ta germline validated no 615 .
srip98263 chr5 40041332 40041332 - L1-Ta germline . no 615 .
srip99043 chr5 52651789 52651789 - L1-Ta germline . no 615 .
srip99483 chr5 68263450 68263450 - L1-Ta germline . no 615 .
srip100799 chr5 89450784 89450784 + L1-Ta germline validated no 615 .
srip101698 chr5 105935376 105935376 + L1-Ta germline . no 615 .
srip105588 chr5 159351203 159351203 - L1-Ta germline . no 615 ADRA1B
srip111098 chr6 77980671 77980671 - L1-Ta germline . no 615 .
srip113335 chr6 123853936 123853936 - L1-Ta germline . no 615 TRDN
srip115053 chr6 157968734 157968734 - L1-Ta germline . no 615 ZDHHC14
srip116882 chr7 41310791 41310791 - L1-Ta germline validated no 615 .
srip119965 chr7 84901732 84901732 - L1-Ta germline . no 615 .
srip121810 chr7 107829265 107829265 + L1-Ta germline . no 615 NRCAM
srip122123 chr7 110484745 110484745 + L1-Ta germline . no 615 IMMP2L
srip124572 chr8 5829286 5829286 - L1-Ta germline . no 615 .
srip127214 chr8 72399219 72399219 - L1-Ta germline . no 615 .
srip127531 chr8 75723720 75723720 + L1-Ta germline validated no 615 .
srip128030 chr8 83740729 83740729 + L1-Ta germline . no 615 .
srip128218 chr8 87315035 87315035 + L1-Ta germline . no 615 .
srip133385 chr9 32463888 32463888 - L1-Ta germline validated no 615 DDX58
srip135588 chr9 111564971 111564971 + L1-Ta germline . no 615 .
srip136791 chrX 29269149 29269149 - L1-Ta germline . no 615 IL1RAPL1
srip137580 chrX 55585158 55585158 - L1-Ta germline . no 615 .
srip140402 chrX 111557749 111557749 - L1-Ta germline . no 615 ZCCHC16
srip140770 chrX 119892834 119892834 - L1-Ta germline . no 615 .
srip141357 chrX 129525268 129525268 - L1-Ta germline . no 615 .
srip142165 chrX 154790187 154790187 + L1-Ta germline . no 615 TMLHE